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A
AddBorder_adapted() (in module library.SimplePTKSkel)
AirQuant (class in library)
Airway (class in tube)
Airway() (tube.Airway method)
AirwayCenter() (in module library.perpinterp)
AirwayFWHMesl (class in measure)
AirwayFWHMesl() (measure.AirwayFWHMesl method)
Ancestors() (tube.Tube method)
ApproxSegDiameter() (tube.Tube method)
AQ_vertcat() (in module library.util)
AQdownload_data() (in module library.util)
AQEllipse (class in measure)
AQstruct2array() (in module library.util)
C
ChangeRawImage_adapted() (in module library.SimplePTKSkel)
Check_centre_with_segmentation() (in module library.perpinterp)
ClassifyLungLobes() (network.ClinicalAirways method)
ClassifySegmentationTubes() (network.TubeNetwork method)
ClinicalAirways (class in network)
ClinicalAirways() (network.ClinicalAirways method)
ColourIndex() (network.TubeNetwork method)
compute_airway_fwhm() (in module library.perpinterp)
Compute_Spline_Points() (in module library.graph)
ComputeArcLength() (tube.Tube method)
ComputeChangeAngle() (tube.Tube method)
ComputeDirections() (tube.Tube method)
ComputeEucLength() (tube.Tube method)
ComputeGradient() (tube.Tube method)
ComputeIntertaper() (tube.Tube method)
ComputeIntrataper() (tube.Tube method)
ComputeMeanArea() (tube.Tube method)
ComputeMeanDiameter() (tube.Tube method)
ComputeMeanHydraulicD() (tube.Tube method)
ComputeParentAngle() (tube.Tube method)
ComputeSiblingAngle() (tube.Tube method)
ComputeTortuosity() (tube.Tube method)
ComputeVolume() (tube.Tube method)
Connected_component_region_2d() (in module library.perpinterp)
CropVol() (in module library.dataio)
D
Descendants() (tube.Tube method)
DualIndex() (in module library.util)
E
ExportCSV() (network.TubeNetwork method)
(tube.Tube method)
ExportOrthoPatches() (network.TubeNetwork method)
(tube.Tube method)
F
Find_centre_via_distance_transfrom() (in module library.perpinterp)
Finding_midpoint_stop() (in module library.perpinterp)
Finding_midpoint_stop_right() (in module library.perpinterp)
FindSplinePoints() (tube.Tube method)
G
Generate_distance_slice() (in module library.perpinterp)
GetSibling() (tube.Tube method)
GetTubeValues() (network.TubeNetwork method)
Grids_coords_for_plane() (in module library.perpinterp)
H
Histogram() (network.TubeNetwork method)
HydraulicDiameter() (measure.AQEllipse method)
I
I2S() (network.TubeNetwork method)
(tube.Tube method)
I2S3() (in module library.util)
IdentifyCarinaAndTrachea() (network.ClinicalAirways method)
L
library (module)
library.dataio (module)
library.graph (module)
library.perpinterp (module)
library.PTKskel (module)
library.SimplePTKSkel (module)
library.util (module)
list_property() (library.AirQuant static method)
load() (network.TubeNetwork static method)
M
MakeDistanceTransform() (network.TubeNetwork method)
MakePatchSlices() (tube.Tube method)
MakeSpline() (tube.Tube method)
MakeTubePatches() (network.TubeNetwork method)
MakeTubes() (network.TubeNetwork method)
Measure() (measure.AirwayFWHMesl method)
(network.TubeNetwork method)
(tube.Tube method)
MimSaveNiftiAsNifti() (in module library.PTKskel)
N
Neighbourhood_4_points_for_2D_images() (in module library.perpinterp)
O
Orthonormal_basis_with_tangent_vector() (in module library.perpinterp)
OrthoView() (network.TubeNetwork method)
(tube.Tube method)
OutputVar() (measure.SuperMeasure method)
P
parse_filename_extension() (in module library.util)
ParseRegion() (network.TubeNetwork method)
ParseSeg() (in module library.dataio)
ParseVolOut() (library.AirQuant method)
(tube.Tube method)
PlaneInterpVol() (in module library.perpinterp)
Plot() (network.TubeNetwork method)
plot() (tube.Tube method)
Plot3() (network.TubeNetwork method)
(tube.Tube method)
Plot3D() (network.TubeNetwork method)
(tube.Tube method)
PlotSpline() (network.TubeNetwork method)
(tube.Tube method)
PlotSplineVecs() (tube.Tube method)
PruneMeasure() (tube.Tube method)
PTKCustomAirwayCentreline (class in library.PTKskel)
PTKIsSimplePoint() (in module library.SimplePTKSkel)
PTKskel() (in module library.PTKskel)
R
ray_cast() (in module library.perpinterp)
ReorientVolume() (in module library.dataio)
Return_2d_point_from_index() (in module library.perpinterp)
Return_centre_pt_image() (in module library.perpinterp)
RunAllTubes() (network.TubeNetwork method)
RunWholeDataset() (in module library.util)
S
S2I() (network.TubeNetwork method)
(tube.Tube method)
S2I3() (in module library.util)
SetChildren() (tube.Tube method)
SetGeneration() (tube.Tube method)
SetParent() (tube.Tube method)
SetRegion() (tube.Tube method)
SetRegionDescendants() (tube.Tube method)
SetRegionGeneration() (tube.Tube method)
skel_2_digraph() (in module library.graph)
SkelPTK_windex() (in module library.SimplePTKSkel)
Span_plane_points_from_basis() (in module library.perpinterp)
spline_normal() (in module library.perpinterp)
SuperMeasure (class in measure)
T
toGif() (tube.Tube method)
toITKsnap() (library.AirQuant method)
toNii() (library.AirQuant method)
Tube (class in tube)
Tube() (tube.Tube method)
TubeNetwork (class in network)
TubeNetwork() (network.TubeNetwork method)
TubesAsEdges() (network.TubeNetwork method)
TubesAsNodes() (network.TubeNetwork method)
V
vector_angle() (in module library.graph)
vol3daxes() (network.TubeNetwork method)
W
writeniiaffine() (in module library.dataio)
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